19/06/2015
XML Save/Load bug fix...
VARNA: Visualization Applet for RNA
A Java lightweight component and applet for drawing the RNA secondary structure
Announcement
Recent changes in Java security policy might prevent you from running VARNA.
Check out this page for details and ways to solve the problem.
- Add a static annotation (Ctrl+Shift+H)
- Add base textual annotation
- Add chemical probing annotation
- Add helix textual annotation
- Add loop textual annotation
- Add region highlight annotation
- Align the exterior loop to a base line (Ctrl+F)
- Automatically annotate helices (Ctrl+Q)
- Automatically annotate interior loops (Alt+Shift+Q)
- Automatically annotate terminal loops (Ctrl+Shift+Q)
- Choose backbone color (Ctrl+K)
- Choose background color (Ctrl+G)
- Choose non-standard bases custom color (Ctrl+Shift+J)
- Choose title color (Ctrl+Alt+T)
- Customize border size (Ctrl+B)
- Customize colors (All) (Alt+U)
- Customize colors (By base type) (Ctrl+U)
- Customize colors (By base-pair) (Shift+U)
- Define "Gaps" bases color (Ctrl+Shift+D)
- Edit annotations from list
- Edit/annotate all bases of an RNA
- Edit/annotate all bases of the closest helix
- Edit/annotate all bases of the closest loop
- Edit/annotate all bases of the closest stem
- Edit/annotate all bases of the closest unpaired region/bulge
- Edit/annotate both bases of the closest base-pair
- Edit/annotate closest base
- Edit/annotate current selection
- Export picture (Ctrl+X)
- Learn more about VARNA (Ctrl+A)
- Manual input of an RNA (Ctrl+N)
- Open new file (Ctrl+O)
- Print current view (Ctrl+P)
- Read color map values from file (Ctrl+Shift+K)
- Redraw in Circular mode (Ctrl+2)
- Redraw in Linear mode (Ctrl+1)
- Redraw in NAView mode (Ctrl+4)
- Redraw in Radiate mode (Ctrl+3)
- Remove annotations from list
- Reset drawing (Ctrl+Shift+R)
- Rotate RNA (Ctrl+R)
- Save RNA structure (Ctrl+S)
- Select title font size (Ctrl+Shift+T)
- Set BP increment in linear mode (Ctrl+H)
- Set base-pairs display style (Ctrl+Shift+P)
- Set color map caption (Ctrl+Shift+C)
- Set color map palette (Ctrl+L)
- Set color map values (Shift+L)
- Set inter-base distance factor (Ctrl+Shift+S)
- Set numbering period (Ctrl+M)
- Set title (Ctrl+T)
- Set zoom level (Ctrl+Z)
- Toggle color map view (Ctrl+Shift+L)
- Toggle non-canonical base-pairs display (Ctrl+W)
- Toggle non-planar portions (pseudoknots) display (Ctrl+E)
- Toggle on/off custom color for non-standard base (Ctrl+J)
- Toggle show/hide base outlines and fillings (formerly known as "Gaspin/Gautheret" mode) (Alt+G)
- Toggle using custom color for "Gaps" (Ctrl+D)
- Zoom in (+)
- Zoom out (-)
Previous page: Popup Menu
Next page: Command-line Usage