VARNA: Visualization Applet for RNA

Any of VARNA's interactive features can be accessed through a popup menu, invoked anywhere on the panel via a platform-dependent gesture (typically right mouse click, or Ctrl+left mouse click). Below is the current menu hierachy:

• File
  • New... (Ctrl+N)
  • Open... (Ctrl+O)
  • Save... (Ctrl+S)
  • Export (Ctrl+X)
  • Print... (Ctrl+P)
• Display
  • View
    • Zoom (Ctrl+Z)
    • Rotation... (Ctrl+R)
    • Border size (Ctrl+B)
  • RNA Style
    • Backbone color (Ctrl+K)
    • Base pairs
      • Base-pairs style... (Ctrl+Shift+P)
      • Show non-canonical BPs (Ctrl+W)
      • Hide tertiary base-pairs (Ctrl+E)
    • Non-standard bases
      • Color (Ctrl+Shift+J)
      • Custom colored (Ctrl+J)
      • Toggle draw bases (Alt+G)
    • 'Gaps' bases
      • Custom colored (Ctrl+D)
      • Color (Ctrl+Shift+D)
  • Color Map
    • Show color map (Ctrl+Shift+L)
    • Caption (Ctrl+Shift+C)
    • Style... (Ctrl+L)
    • Edit values... (Shift+L)
    • Load values... (Ctrl+Shift+K)
  • Misc
    • Background color (Ctrl+G)
    • Num. periodicity (Ctrl+M)
    • Title
      • Set title... (Ctrl+T)
      • Font (Ctrl+Shift+T)
      • Color (Ctrl+Alt+T)
• Edit
  • Redraw
    • BP height increment (Ctrl+H)
    • Flat exterior loop (Ctrl+F)
    • Space between bases (Ctrl+Shift+S)
    • Reset (Ctrl+Shift+R)
    • Algorithm
      • Linear (Ctrl+1)
      • Circular (Ctrl+2)
      • Radiate (Ctrl+3)
      • NAView (Ctrl+4)
  • Colors
    • By base (Ctrl+U)
    • By BP (Shift+U)
    • By position (Alt+U)
  • Annotations
    • Edit from list...
    • Remove from list...
    • Auto helices (Ctrl+Q)
    • Auto interior loops (Alt+Shift+Q)
    • Auto terminal loops (Ctrl+Shift+Q)
    • New
      • Here (Ctrl+Shift+H)
      • Base
      • Loop
      • Helix
      • Region
      • Chem. Prob.
  • Selection
    • Current
    • Base
    • Base-pair
    • Bulge
    • Loop
    • Helix
    • Stem
    • All
• About