19/06/2015
XML Save/Load bug fix...
Recent changes in Java security policy might prevent you from running VARNA.
Check out this page for details and ways to solve the problem.
This example features a very creative usage of color redefinitions.
Additionally, a rotation
parameter is defined to orient the drawing correctly.
Note to Firefox users: Certain versions of Firefox may be confused by self-signed certificates, and silently prevent the applet from running. If the frame above shows up empty, then try reloading the page.
<applet code="VARNA.class" codebase="bin" archive="VARNA.jar" width="250" height="250"> <param name="sequenceDBN" value="GGGGACCAUAAUGUGUUAAGGGGCCGUAGUAGUGUGUGAGCGIUSGCUCCGCCUAUAU" /> <param name="structureDBN" value="(.((((((...).)).((.((((...))))((.....))((((...)))))).).)))" /> <param name="background" value="#FF00FF" /> <param name="baseOutline" value="#FFFFFF" /> <param name="bp" value="#20FF00" /> <param name="backbone" value="#20FF00" /> <param name="baseInner" value="#20FF00" /> <param name="baseName" value="#FFFFFF" /> <param name="baseNum" value="#FFFFFF" /> <param name="rotation" value="-70" /> <param name="titleColor" value="#FFFFFF" /> <param name="title" value="Funky !" /> /applet> |
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